PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco007999.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family MIKC_MADS
Protein Properties Length: 234aa    MW: 26894.7 Da    PI: 9.9592
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco007999.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF1009.4e-32959151
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                 krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyeys+
  Aco007999.1  9 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSN 59
                 79***********************************************95 PP

2K-box104.21.7e-3478172599
        K-box   5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                  sg   e + ++++ qe+akL+ +i+ Lq+ +Rhl+G++L+sL++keL+qLe++Le+++++iRskK+ell+++ie++qk+e elq++n+ Lr+k+ 
  Aco007999.1  78 SGPVIEVNSQQYYLQEAAKLRHQIQILQNANRHLMGDSLSSLTVKELKQLENRLERGITRIRSKKHELLFAEIEHMQKRELELQHDNMHLRAKVV 172
                  3333778889**********************************************************************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006634.09161IPR002100Transcription factor, MADS-box
SMARTSM004321.3E-42160IPR002100Transcription factor, MADS-box
CDDcd002653.14E-46276No hitNo description
SuperFamilySSF554553.01E-34284IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004045.6E-33323IPR002100Transcription factor, MADS-box
PfamPF003198.4E-271057IPR002100Transcription factor, MADS-box
PRINTSPR004045.6E-332338IPR002100Transcription factor, MADS-box
PRINTSPR004045.6E-333859IPR002100Transcription factor, MADS-box
PfamPF014863.3E-2783171IPR002487Transcription factor, K-box
PROSITE profilePS5129715.39887177IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MGRGKIEIKR IENTTNRQVT FCKRRNGLLK KAYELSVLCD AEVALIVFSS RGRLYEYSNN  60
STKSIIERYK KASDKSNSGP VIEVNSQQYY LQEAAKLRHQ IQILQNANRH LMGDSLSSLT  120
VKELKQLENR LERGITRIRS KKHELLFAEI EHMQKRELEL QHDNMHLRAK VVENQRAQES  180
GMQQPANEFD ALAPVDLNAF YRVGILETAP NVLERRDRTA LQLRCESKPD STA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P1e-21178178Myocyte-specific enhancer factor 2B
1tqe_Q1e-21178178Myocyte-specific enhancer factor 2B
1tqe_R1e-21178178Myocyte-specific enhancer factor 2B
1tqe_S1e-21178178Myocyte-specific enhancer factor 2B
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008781979.11e-127PREDICTED: MADS-box transcription factor 3-like
RefseqXP_008781978.11e-127PREDICTED: MADS-box transcription factor 3-like
SwissprotQ8RU311e-99MAD21_ORYSJ; MADS-box transcription factor 21
TrEMBLQ5KT551e-127Q5KT55_9ASPA; MADS-box transcription factor
STRINGGSMUA_Achr5P16870_0011e-118(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP64937144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.11e-94MIKC_MADS family protein